PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01276.100
Common NameJCGZ_26300, LOC105648655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 254aa    MW: 28092.4 Da    PI: 5.4348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01276.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20129179255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  Jcr4S01276.100 129 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAFRMRG 179
                     7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-32128188IPR001471AP2/ERF domain
CDDcd000182.12E-33129188No hitNo description
PROSITE profilePS5103224.421129187IPR001471AP2/ERF domain
SMARTSM003803.5E-39129193IPR001471AP2/ERF domain
PfamPF008477.0E-15129179IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-23129189IPR016177DNA-binding domain
PRINTSPR003675.7E-11130141IPR001471AP2/ERF domain
PRINTSPR003675.7E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNEAIISDSN LSHCSTPTST YSSLFPCLTD NWGDLPLKVD DSEDMVIYNF LSDAVCSGWS  60
PLDFTSSPAS ATPTTAVKTE PTDEVEPASF VQEAASNIAL LESTPILENR SQGTDLLKKQ  120
NQKVSKGRHY RGVRQRPWGK FAAEIRDPAK NGARVWLGTY ETAEEAALAY DRAAFRMRGS  180
RALLNFPHKI GSNEPEPVRI TSKRSETEIA ASAKRRKIMA GDEANELEPE REEKRHNVVF  240
HVGPMPVGEQ LLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-39125194170ATERF1
3gcc_A2e-39125194170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090506.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404793e-88ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A067JSE30.0A0A067JSE3_JATCU; Uncharacterized protein
STRINGPOPTR_0001s11770.11e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-51ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]